People

Professors

Professor, 2017-
Ph.D. University of New England, Australia
M.Sc UFPR
GradDipCompSci UFPR
B.Sc. UFPR

My main research interests are in the development of computational methods for optimization of biological problems; statistical and functional analysis methods for high throughput genomic data (microarrays, SNPs, sequence); estimation of population genetics parameters using genome-wide data; and simulation of biological systems.

Email: gondroce AT msu.edu

Assistant Professor, 2017 -
Postdoc 2016 North Carolina State University
Ph.D. (dairy science) 2011 University of Wisconsin-Madison
M.S. (biometry) 2011 University of Wisconsin-Madison
M.S. (biochemistry) 2007 Case Western Reserve University
B.S. (biology) 2005 USTC, China (中国科大)

Email: huangw53 AT msu.edu

Professor, 2006 -

Professor 2006-
Associate Professor 2000-2006
Assistant Professor 1995-2000
Ph.D. (Dairy Science) 1993 University of Winsconsin-Madison
Masters (Animal Breeding) 1993 University of Guelph
B.S. (Animal Science) 1986 University of Guelph

My personal research interests are in the development and applications of statistical models to problems in quantitative genetics and general agricultural research. I am also co-director of the CANR Statistical Consulting Center (www.scc.msu.edu) and teacher of graduate level service courses in statistical methods and experimental design.

Email: tempelma AT msu.edu

Staff

Lab Manager, 2017 -

M.S. (genetics) 1999 University of Kentucky
B.S. (biotechnology) 1993 University of Kentucky

I have been a lab manager at MSU since 1997. In addition to the Huang Lab, I am also lab manager for two other faculty members. I received my B.S. and M.S. from the University of Kentucky. In addition to conducting research, I am responsible for overseeing the routine functioning of the laboratory as well as training students. When I’m not at work, I’m busy trying to keep up with my five-year old twin girls.

Post-docs

Research Scholar, 2018 -

Ph.D. (Quantitative Genetics) 2014
M.Sc. (Statistics) 2011
B.Sc. (Statistics) 2008

With a strong statistical background, my main objectives and interests are applications of computational and statistical methods to research on quantitative genetics, in order to improve genomic prediction.

Email: castrod7 AT msu.edu

Visiting Scholar, 2019 -

Associate Professor(computer science) 2014- Nanjing Agricultural University, China
Ph.D. (bioinformatics) 2014 Nanjing Agricultural University, China
M.S. (computer science) 2009 Nanjing Agricultural University, China
B.S. (information science) 2002 Nanjing Agricultural University, China

My research interests are high-throughput omics data analysis, development of bioinformatics tools and construction of bioinformatics database. Now my research focuses on alternative splicing in livestock.

Research Associate, 2019 -

Ph.D. (Computing Science) 2019 University of Stirling
B.Sc. (Computing Science) 2013 University of Stirling

I joined MSU as a Research Associate at the end of 2019, working on feature selection optimisation using evolutionary algorithms in genetic prediction. I received my Ph.D. shortly before this in Stirling, Scotland. I'm an amateur photographer, and love going on photo-walks with my wife and dogs.

Email: reidken1 AT msu.edu

Research Associate, 2020 -

Ph.D. (Animal Science) 2019 North Carolina State University
MS (Statistics) 2019 North Carolina State University
MS (Animal Science) 2016 Tennessee State University
B.V.Sc. & AH 2011 Tribhuvan University

My interests are application of computational and statistical methods for the genetic improvement of economically important traits in livestock and plants. Other than research, I love hiking and spending time with friends and family.

Email: khanalpi AT msu.edu

Research Associate, 2019 -

Ph.D. (Animal Breeding & Genetics) 2013 São Paulo State University FCAV/UNESP
M.Sc. (Animal Breeding & Genetics) 2010 São Paulo State University FCAV/UNESP
B.Sc. (Biology) 2007 São Paulo State University FCAV/UNESP

I joined MSU as a Research Associate at the beginning of 2019. My current project aims to describe the variation of genes of the immune systems of Holstein cows using RNA-seq data.

Email: pelicion AT msu.edu

Postdoctoral Scholar, 2019 -

Ph.D. (fisheries, aquaculture and aquatic science) 2018 Auburn University
M.S. student (aquaculture) 2014 Ocean University of China
B.S. (aquaculture) 2013 China Agricultural University

Life is fantastic, but also complicated. It is of importance and interest to understand the molecular mechanisms underlying complex traits, and breed animals with great performance and production traits. My primary research interest is using genetics, genomics, and bioinformatics to deal with problems in animal science.

Masters & Ph.D. Students

Graduate Student, 2019 -

research assistant 2017-2019 South University of Science and Technology, China
bioinformatics technician 2016-2017 Novogene Co. Ltd, China
M.S. (biochemistry) 2015 Dalian Medical University, China

I am interested in biological questions such as how is a specific phenotype determined by genetic and epigenetic information. I am trying to employ NGS data analysis to find some clues.

Ph.D. Candidate, 2016 -

PhD Candidate, Genetics & Genome Sciences Graduate Program 2016- Michigan State University
B.A. (Classics) 2013 University of Rhode Island
B.Sc.(Biology) 2013 University of Rhode Island

My PhD research aims to investigate spatiotemporal dynamics of DNA methylation in livestock species to identify novel sites of gene regulation. I also look at how environmental stress impacts the epigenome to induce long-term changes in animal physiology. Most of my work contributes to the Functional ANnotation of Animal Genomes (FAANG) Initiative.

Email: corbet35 AT msu.edu

Ph.D. Student, 2018 -

Ph.D. student (Dual Major, Animal Science & Computation Mathematics, Science and Engineering) 2018- Michigan State University
M.S. (Biostatistics) 2018 Michigan State University
B.S. (Information and Computing Science) 2016 Minzu University of China

I am a PhD student and a research assistant focusing on animal welfare & behavior and precision livestock using state-of-the-art algorithms. My research interests include Animal Behavior, Deep Learning & Hyperparameter Optimization, Genetics, Image Analysis, and Statistical Models. My research topic is Using behavioral, genomic, and artificial intelligence tools to study agonistic behavior in group-housed pigs. At the same time, I'm a certificated Chinese cook. I have a passion for bodybuilding and basketball. My favorite basketball player is Lebron James.

Email: hanjunji AT msu.edu

Graduate Student, 2017 -

Ph.D. Student 2017- Michigan State University
MS (Animal Science) 2017
DVM 2014

I joined MSU as a Fulbright scholar in 2015 for a Masters program focusing on dairy cattle breeding and genetics. Right after my Masters, I started my PhD program on applications of next generation sequence data in beef cattle genomics. Other than research, I like playing (and watching) cricket and spending time with my family and friends.


Email: nawazmuh AT msu.edu

Ph.D. Student, 2018 -

Ph.D. student 2018- Michigan State University
M.S. (Animal Science) 2018 North Carolina State University
B.S. (Animal Science) 2016 University of Nebraska-Lincoln

I am currently working on using multiple swine breeds in genetic prediction and how we can boost prediction accuracy. I also have an interest in modeling epistasis and economic models as well. In my free time, I enjoy baking and hiking with my boyfriend and Australian Shepard, May.


Email: wackelha AT msu.edu

Visiting Student, 2019 -

Graduate student 2015- South China Agricultural University, China
B.S. (animal biotechnology) 2015 South China Agricultural University, China

Pigs play an important role in agricultural production. I used to work on improving pig production ability (e.g. make pig grow faster, have higher feed efficiency) through biostatistics and bioinformatics tools. Currently, I focus on using multiple omics to research the pig crossing problem.

Undergraduate Student, 2018 -

B.S. (animal science) Expected 2020 Michigan State University

I am seeking my bachelor’s degree in Animal Science at Michigan State University. I have lots of livestock and veterinary experience around the world. Currently, working with large animals and focusing on genetic research.

MS Graduate Student 2018-

B.S. (Animal Science) 2015 South Dakota State University

Master's student studying Animal Breeding and Genetics in Dr. Tasia Taxis' lab. I currently study host and viral microRNA biomarker profiles for Bovine Leukemia Virus in dairy cattle as well as trying to identify integrated, cost-effective methods to eliminate BLV in a commercial dairy herd. I am also the MSU Livestock Judging coach and the Animal Science Graduate Student Association secretary.

Email: dejongta AT msu.edu

Alumni

Name Role Tenure Present
Zhijun Dai Postdoctoral Scholar 2017-2018 Lecturer, Hunan Agricultural University, China
Jie Yang Vistiting Scholar 2017-2018 Associate Professor, South China Agricultural University, China
Michelle Ratchford Undergraduate Student 2018-2018
Andre Nascimento Visiting Student 2019-2020
Ândrea Renata Visiting Student 2019-2020
Ndeye Penda Ndiaye Visiting Scholar 2019-2020